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- 1Black Panther: A Nation Under Our FeetTa-Nehisi Coates, illustrated by Brian Stelfreeze · 2016 · 1 honor
- 2Cheap Novelties: The Pleasures Of Urban DecayBen Katchor · 2016 · 1 honor
- 3Cook Korean! A Comic Book With RecipesRobin Ha · 2016 · 1 honor
- 4Demon, Volume 1Jason Shiga · 2016 · 1 honor
- 5Faith Volume 1: Hollywood And VineJody Houser, illustrated by Francis Portela and Marguerite Sauvage · 2016 · 1 honor
- 6Hot Dog Taste TestLisa Hanawalt · 2016 · 1 honor
- 7March: Book ThreeJohn Lewis, with Andrew Aydin, illustrated by Nate Powell · 2016 · 1 honor
- 8Monstress Volume 1: AwakeningMarjorie Liu, illustrated by Sana Takeda · 2016 · 1 honor
- 9MooncopTom Gauld · 2016 · 1 honor
- 10ODY-C: Cycle OneMatt Fraction, illustrated by Christian Ward · 2016 · 1 honor
- 11PantherBrecht Evens · 2016 · 1 honor
- 12Paper Girls Volume 1Brian K Vaughan, illustrated by Cliff Chiang · 2016 · 1 honor
- 13Paracuellos Volume 1Carlos Giménez · 2016 · 1 honor
- 14PatienceDaniel Clowes · 2016 · 1 honor
- 15Patsy Walker, A.K.A. Hellcat! Volume 1: Hooked On A FelineKate Leth, illustrated by Brittney Williams · 2016 · 1 honor
- 16PeplumBlutch · 2016 · 1 honor
- 17PlutonaEmi Lenox and Jeff Lemire, illustrated by Emi Lenox · 2016 · 1 honor
- 18Pretty Deadly Volume 2: The BearKelly Sue DeConnick, illustrated by Emma Ríos · 2016 · 1 honor
- 19Rolling Blackouts: Dispatches From Turkey, Syria, And IraqSarah Glidden · 2016 · 1 honor
- 20The Arab Of The Future 2: A Childhood In The Middle East, 1984-1985: A Graphic MemoirRiad Sattouf · 2016 · 1 honor
- 21The Art Of Charlie Chan Hock ChyeSonny Liew · 2016 · 1 honor
- 22The Best American Comics 2016Roz Chast (editor) · 2016 · 1 honor
- 23The Caped Crusade: Batman And The Rise Of Nerd CultureGlen Weldon · 2016 · 1 honor
- 24The Familiar, Volume 3: Honeysuckle & PainMark Z. Danielewski · 2016 · 1 honor
- 25The Greatest Of MarlysLynda Barry · 2016 · 1 honor
- 26The One Hundred Nights Of Hero: A Graphic NovelIsabel Greenberg · 2016 · 1 honor
- 27The White Donkey: Terminal LanceMaximilian Uriarte · 2016 · 1 honor
- 28Things From The FloodSimon Stålenhag · 2016 · 1 honor
- 29Vision Volume 1: Little Worse Than A ManTom King, illustrated by Gabriel Hernandez Walta · 2016 · 1 honor